After giving a variety of biblical examples of God willing evil deeds so as to punish the wicked and bring about salvation, Calvin notes that by contrast the "doctrine of permission" makes God aloof from salvation history. The God construed by the doctrine of permission cannot truly be the active Lord of history. For Calvin, those who rely upon the doctrine of permission depict God ‘as if he sat in a watch-tower waiting for fortuitous events, his judgments meanwhile depending on the will of man.’ This aloof, detached, passive God is not the God of the Bible. The God of the Bible, Calvin observes, acts within the minds of human beings not only to enlighten them, but also to blind them and to intoxicate them. God thereby compels the wicked to serve him.
The danger with the doctrine of permission is that it seems to question the goodness of the omnipotent God’s eternal decree. In observing that predestination means ‘the eternal decree of God, by which he determined within himself whatever he wished to happen with regard to every man,’ Calvin puts his finger on the difficulty: God’s permission of everlasting rebellion cannot be disjoined from God’s eternal will. God fully knows and freely wills this order, which includes everlasting rebellion. Since God is free and all-powerful, he is not constrained to create this kind of order. God wills an order in which some are left out from union with God, and so this must be a good order, one that does not need the covering of the doctrine of permission. Calvin senses that the doctrine of permission originates in doubts about the justice of reprobation ‘by the just but inscrutable judgment of God, to show forth his glory by their condemnation.’ Discussing Paul’s interpretation of Malachi 1:2,3 (see Rom. 9:13), Calvin urges that the doctrine of double predestination in fact elucidates the scriptural doctrine of undeserved grace, God’s bounty rather than harshness.
The notion of permission is a way of opening a gap between the ultimate outcome of history and God Himself, the Lord of history. Calvin on the contrary insists on the goodness of God’s plan, which is a plan that includes hell.